BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB036D12SP1|AL430231
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig564 1040 0.0
3x_Contig208 182 1e-45
>3x_Contig564
Length = 2733
Score = 1040 bits (515), Expect = 0.0
Identities = 632/683 (92%), Gaps = 4/683 (0%)
Strand = Plus / Minus
Query: 202 cgagakgagacgagatgagattgtacgttttctatttgavatatgattttbttcatttca 261
||||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct: 2698 cgagatgagacgagatgagattgtacgttttctatttgaaatatgaggtttttcatttca 2639
Query: 262 cttttgtcaagtacgaagtatttttttttcttatggggccatagtaaagaatttgacgag 321
|||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||
Sbjct: 2638 cttttgtcaagtacgaagaatgggtttgtcttatgaggccatagtaaagaatttgacgag 2579
Query: 322 cgtcaggvagccatagatgabatgttagactatattgatgcctggvaatttgagggtagg 381
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct: 2578 cgtcaggaagccatagatgatatgttagactatattgatgcctggaaatttgaggatagg 2519
Query: 382 kggttgcgattagcacttttaggagggatgatgattatmgtcccggttcttgccattaat 441
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 2518 tggttgcgattagcacttttaggagggatgatgattatagtcccgggtcttgccagtaag 2459
Query: 442 actgaataavammmvacatgtgagcacaatatatmagacagcmttctggtcatcaaaact 501
||||||| | |||| ||||||| | ||| ||||||| |||||||||||||||||
Sbjct: 2458 actgaattaattaaaacatttgagcacgttttataagacagcattctggtcatcaaaact 2399
Query: 502 ccaagaacagaaatccactaamatgatataatactgtsacctcagtaaggtccgasaccm 561
|||||||||||||||||| || |||| |||||||||| ||||||||||||||||| |||
Sbjct: 2398 ccaagaacagaaatccacgaaaatgagataatactgtaacctcagtaaggtccgaaacca 2339
Query: 562 aatgggagavtgtttccmatattttccactggtacattagtatcaatttgatacattatg 621
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 aatgggagaatgtttccaatattttccactggtacattagtatcaatttgatacattatg 2279
Query: 622 amgagtactcacgtgaccmtcgtccactatgattttcgatctcatcgttgatctctgaaa 681
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 aagagtactcacgtgaccatcgtccactatgattttcgatctcatcgttgatctctgaaa 2219
Query: 682 agaaagaaaaaaaatttcgaaaaagagatttgaacacacaaatcgttaaaaccaaaagtt 741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2218 agaaagaaaaaaaatttcgaaaaagagatttgaacacacaaatcgtttaaaccaaaagtt 2159
Query: 742 cagtcatacgaatttgcacacacatacggaaggaagatttcaaccaa-ttct---tccgt 797
||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 2158 cagtcatacgaattttcacacacatacggaaggaagatttcaaccaagttctgtctctgt 2099
Query: 798 gtactattattacagcaggcctccctttctgatagccataagatataagaagaactcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 gtactattattacagcaggcctccctttctgatagccataagatataagaagaactcaaa 2039
Query: 858 aagcaaaamagtatgagtgctga 880
|||||||| ||||||||||||||
Sbjct: 2038 aagcaaaacagtatgagtgctga 2016
>3x_Contig208
Length = 1357
Score = 182 bits (90), Expect = 1e-45
Identities = 119/125 (95%), Gaps = 4/125 (3%)
Strand = Plus / Minus
Query: 1 gatcagaatcaacctaagttatgcttggtgctattattttatctctgtcggtgatttcaa 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gatcagaatcaacctcagttatgcttggtgctattattttatctctgtcggtgatttcat 66
Query: 61 aactcgg-gctggaat-ccttgaaaaaagg--aagtgtatctgcagtttcaacttccgaa 116
||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 65 aactcggtgctggaatcccttgaaaaaaggaaaagtgtatctgcagtttcaacttccgaa 6
Query: 117 agcat 121
|||||
Sbjct: 5 agcat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7768
Number of Sequences: 1807
Number of extensions: 7768
Number of successful extensions: 259
Number of sequences better than 1.0e-20: 2
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 50 (101.5 bits)